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ITHEA Classification Structure > I. Computing Methodologies  > I.6 SIMULATION AND MODELING 
ITHEA Classification Structure > J. Computer Applications  > J.3 LIFE AND MEDICAL SCIENCES 
ITHEA Classification Structure > J. Computer Applications  > J.6 COMPUTER-AIDED ENGINEERING 
SIMULATION OF BIOLOGICAL MODELS USING CAD TOOLS: NEEDS AND FUTURE
By: Víctor de la Hoz, César Pumar, Nicolás Quintero, Paula Co (4521 reads)
Rating: (1.00/10)

Abstract: In this paper, the main characteristics that are expected from this kind of software and the major tools that can be found at the present time are explained, as well as a proposal of a possible program that solves and fixes all the current lacks, for instance, the nonexistance of a multiplatform software, concluded after an exhaustive study of this proof of concept. The computer-aided design (CAD) tools are essential to achieve right and realiable results in Synthetic Biology researches. Furthermore, a comparison between two CAD’s programs is made simulating a synthetic biological circuit, showing the results to study how new software improvements can be developed to get better conclusions in this kind of experiments, provided by new tools. The design of a tool that could be developed in the future is proposed, based on non conventional programming paradigms (DNA computing for instance), that allow researchers to solve multiple kind of real problems.

Keywords: Synthetic Biology, CAD tools, computational, free software, in silico, simulation

ACM Classification Keywords: J.6 COMPUTER-AIDED ENGINEERING, J.3 LIFE AND MEDICAL SCIENCES, I.6 SIMULATION AND MODELING

Link:

SIMULATION OF BIOLOGICAL MODELS USING CAD TOOLS: NEEDS AND FUTURE

Víctor de la Hoz, César Pumar, Nicolás Quintero, Paula Cordero

http://www.foibg.com/ijitk/ijitk-vol07/ijitk07-01-p05.pdf

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I.6 SIMULATION AND MODELING
article: About convergence of fuzzy perceptive elements sequences, defined on ... · METHOD FOR CONTROLLING STATE CHANNEL WIRELESS NETWORKS UNDER A PRIORI ... · PROBLEM OF RESTORING THE FUNCTIONS-SIGNALS BY FINITE SET OF DATA WITH ERRORS · SOME APPROACHES TO THE DEVELOPMENT OF ANALYTICAL MODEL FOR THE RESEARCH ... · MICRORAM: A SIMULATION MODEL OF A COLONY OF BACTERIA EVOLVING INSIDE ... · MODELING AND OPTIMIZATION OF CRYOGENIC – OPTICAL GRAVIMETERS · ЛИНГВИСТИЧЕСКИЕ И ИНТЕЛЛЕКТУАЛЬНЫЕ ИНСТРУ� · CELLULAR COMPUTING: TOWARDS AN ARTIFICIAL CELL · SIMULATION OF BIOLOGICAL MODELS USING CAD TOOLS: NEEDS AND FUTURE · BIOLOGICAL PROCESSES STUDIES THROUGH SOFTWARE TOOLS:... · MODELING, SIMULATION AND APPLICATION OF BACTERIAL TRANSDUCTION IN ... · ABOUT POSSIBILITY-THEORETICAL METHOD OF PIECEWISE-LINEAR APPROXIMATION ... · PARETO-OPTIMUM APPROACH TO MATHEMATICAL MODELING OF ODOURS IDENTIFICATION ... · ОБОБЩЕНИЯ ПРИНЦИПОВ РАСПРЕДЕЛЕНИЯ ЗАТРАТ Д · ENERGY-EFFICIENT PROTOCOL IN OMNET++ SIMULATION ENVIRONMENT · SELF-ORGANIZING ROUTING ALGORITHM FOR WIRELESS SENSORS NETWORKS (WSN) USING ... · GLOBAL MEMORY STRUCTURE FOR ANT COLONY OPTIMIZATION ALGORITHMS · SIMULATION OF DNA CUTTING · COLLISION DETECTION AND TREATMENT USING 2D RECONFIGURABLE HARDWARE · APPLICATION OF PARETO OPTIMIZATION APPROACH TO OBSERVABILITY PROBLEM ... · INDIVIDUALLY OPTIMAL PRINCIPLES OF DISTRIBUTION OF GREENHOUSE GAS EMMISION QUOT · GENE CODIFICATION FOR NOVEL DNA COMPUTING PROCEDURES · AN ONTOLOGY-BASED APPROACH TO THE INCOMPLETE SIMULATION MODEL ... · REDUCTION MEASUREMENTS FOR CALCULATION IN FUZZY EXPERIMENT SCHEME · A DNA CODIFICATION FOR GENETIC ALGORITHMS SIMULATION · GLOBAL MEMORY STRUCTURE FOR ANT COLONY OPTIMIZATION ALGORITHMS · SIMULATION OF DNA CUTTING · PROGNOSTICATION OF EFFICIENCY OF MEDICAL AND PROPHYLACTIC ... · STATISTICAL MODELING OF SPREAD OF OPTICAL FIELDS IN FIRES · DNA SIMULATION OF GENETIC ALGORITHMS: FITNESS COMPUTATION1 · SOLVING TRAVELLING SALESMAN PROBLEM IN A SIMULATION ... · DYNAMIC DISTRIBUTION SIMULATION MODEL OBJECTS ... ·
J.3 LIFE AND MEDICAL SCIENCES
article: About estimate of fuzzy differential equations distribution · APPLICATION OF FIBER-OPTICAL MODULATORS AS MEASURING DEVICES IN ... · IT-COMMUNICATORS FOR MEDICINE · MULTILEVEL SENSOR NETWORKS FOR PRECISION FARMING AND ENVIRONMENTAL MONITORING · CHARACTERIZATION OF A CUFF-BASED SHAPE MEMORY ALLOY (SMA) ACTUATOR · PORTABLE BIOSENSOR: FROM IDEA TO MARKET · GEOMETRIC APPROACH FOR GAUSSIAN-KERNEL BOLSTERED ERROR ESTIMATION... · SIMULATION OF BIOLOGICAL MODELS USING CAD TOOLS: NEEDS AND FUTURE · BIOLOGICAL PROCESSES STUDIES THROUGH SOFTWARE TOOLS:... · REMOTE SMART BIOSENSORS FOR PRECISION FARMING AND ENVIRONMENT PROTECTION · AUTOMATED SYSTEM FOR QUANTIFYING THE LEVEL OF PREPARATION IN COLONOSCOPY · АНАЛИЗ АЛГОРИТМОВ ПРОГНОЗИРОВАНИЯ ТРЕТИЧН� · ON THE DISCRETIZATION OF DISTANCE GEOMETRY PROBLEMS · SYMMETRIZATION: RANKING AND CLUSTERING IN PROTEIN INTERFACES · DATA ACQISITION SYSTEMS FOR PRECISION FARMING · HISTOLOGY IMAGE SEGMENTATION · ВЫЯВЛЕНИЕ ФРАКТАЛОПОДОБНЫХ СТРУКТУР В ДНК- · PORTABLE DEVICE "FLORATEST" AS TOOL FOR ESTIMATING OF MEGALOPOLIS ECOLOGY STATE · KIRLIAN IMAGE PREPROCESSING DIAGNOSTIC SYSTEM · WIRELESS COMMUNICATION AND CONTROL SYSTEM FOR PORTABLE ... · ON THE FEASIBILITY OF STEERING SWALLOWABLE MICROSYSTEM CAPSULES USING ... · ANALYSIS OF DERMATOGLYPHIC SIGNS FOR DEFINITION PSYCHIC FUNCTIONAL ... · PORTABLE DEVICE "FLORATEST" AS TOOL FOR ESTIMATING OF MEGALOPOLIS ECOLOGY STATE · SMART PORTABLE FLUOROMETER FOR EXPRESS-DIAGNOSTICS OF PHOTOSYNTHESIS: ... · APPLICATION OF THE ARTIFICIAL INTELLIGENCE ALGORITHMS FOR SYSTEM ANALYSIS ... · APPLICATION OF NETWORK TECHNOLOGIES FOR DEVELOPMENT ... · ANALYSIS AND OPTIMIZATION OF SYNTHETIC APERTURE ULTRASOUND ... · EXPLORATION BY MEANS OF COMPUTER SIMULATION OF NONLINEAR HIERARCHICAL ... · MODEL CONSTRUCTION AND RESEARCH USING SYSTEM COMPOSITIONAL ... · GROUND OF MODEL FOR THE GENERALIZED CRITERION FORMING AT ... ·
J.6 COMPUTER-AIDED ENGINEERING
article: PROBLEM AND MATHEMATICAL MODELS FOR RESCUE TECHNICS ACQUISITION · SIMULATION OF BIOLOGICAL MODELS USING CAD TOOLS: NEEDS AND FUTURE · ИДЕНТИФИКАЦИЯ ВРЕМЕНИ РАСПРОСТРАНЕНИЯ... · ПЕРСПЕКТИВНЫЕ НАПРАВЛЕНИЯ РАЗВИТИЯ ... · DEVELOPING OF DISTRIBUTED VIRTUAL LABORATORIES FOR SMART SENSOR SYSTEM ... · CALCULATING OF RELIABILITY PARAMETERS OF MICROELECTRONIC COMPONENTS AND ... · THE INTELLIGENT PRINCIPLE OF VIRTUAL LABORATORIES FOR COMPUTER AIDED DESIGN ... · DISTRIBUTED VIRTUAL LABORATORIES FOR SMART SENSOR SYSTEM DESIGN · ON THE FEASIBILITY OF STEERING SWALLOWABLE MICROSYSTEM CAPSULES ... · SELF-ORGANIZING MAP AND CELLULAR AUTOMATA COMBINED TECHNIQUE ... · SYSTEMS OF TEACHING ENGINEERING WORK ON BASE OF INTERNET TECHNOLOGIES · INFORMATION-ANALYTICAL SYSTEM FOR DESIGN OF NEW INORGANIC COMPOUNDS ·
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